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to get the sequence of the promoter

Everything on bioinformatics, the science of information technology as applied to biological research.

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to get the sequence of the promoter

Postby snoopline on Fri May 04, 2007 9:10 am

Hi,

I'd like to analyse the promoter sequence (let's say 1kbp) of a gene using Transfac.
But first, I need the sequence...
Does anyone know how to get the sequence located in the 5' of the first exon on a gene of interest ?

any suggestion very welcome,
snoopline
snoopline
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Postby snoopline on Fri May 04, 2007 9:37 pm

Ok I got it
Go on
http://www.dsi.univ-paris5.fr/genatlas
find your gene of interest by filling the form (symbol name or id OMIM).
on the result page click on the gene you are interested about
a page with a lot of information is displayed
In the DNA paragraph you'll find a link :
10 Kb 5' upstream gene genomic sequence study

Just click on it to get the sequence
It's a little bit to long for alibaba2 so cut it and paste it in alibaba2

If others find other solutions, feel free to share.
Snoopline
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