The Nucleic Acids Research online Molecular Biology Database Collection is a public …

• Abstract
• Commentary
• References

Biology Articles » Bioinformatics » The Molecular Biology Database Collection: 2008 update » References

References

- The Molecular Biology Database Collection: 2008 update

  
Pedroso I, Rivera G, Lazo F, Chacón M, Ossandón F, Veloso F, Holmes DS. AlterORF: a database of alternate open reading frames. Nucleic Acids Res. (2008) 36. in press (gkm886). Hammami R, Zouhir A, Ben Hamida J, Fliss I. BACTIBASE: a new web-accessible database for bacteriocin characterization. BMC Microbiol (2007) 7:89 Tourasse N, Kolstø A-B. SuperCAT: a supertree database for combined and integrative Multilocus Sequence Typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis, and B. thuringiensis). Nucleic Acids Res. (2008) 36. in press (gkm877). Jensen LJ, Julien P, Kuhn M, von Mering C, Muller J, Doerks T, Bork P. eggNOG: automated construction and annotation of orthologous groups of genes. Nucleic Acids Res. (2008) 36. in press (gkm796). Darnell DK, Kaur S, Stanislaw S, Davey S, Konieczka JH, Yatskievych TA, Antin PB. GEISHA: an in situ hybridization gene expression resource for the chicken embryo. Cytogenet. Genome Res. (2007) 117:30–35 Heazlewood J, Durek P, Hummel J, Selbig J, Weckwerth W, Walther D, Schulze WX. PhosPhAt: A database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res. (2008) 36. in press (gkm812). Jensen LJ, Kuhn M, von Mering C, Campillos M, Bork P. STITCH: interaction networks of chemicals and proteins. Nucleic Acids Res. (2008) 36. in press (gkm795). He X, Chang S, Zhang J, Zhao Q, Xiang H, Kusonmano K, Yang L, Sun ZS, Yang H, Wang J. MethyCancer: the database of human DNA methylation and cancer. Nucleic Acids Res. (2008) 36. in press (gkm730). Ongenaert M, Van Neste L, De Meyer T, Menschaert G, Bekaert S, Van Criekinge W. PubMeth: a cancer methylation database combining text-mining and expert annotation. Nucleic Acids Res. (2008) 36. in press (gkm788). Betel D, Wilson M, Gabow A, Sander C. The microRNA.org resource: targets and expression. Nucleic Acids Res. (2008) 36. in press (gkm995). Nam S, Kim B, Shin S, Lee S. miRGator: an integrated system for functional annotation of microRNAs. Nucleic Acids Res. (2008) 36. in press (gkm829). Zhang R, Lin Y, Zhang CT. Greglist: a database listing potential G-quadruplex regulated genes. Nucleic Acids Res. (2008) 36. in press (gkm787). Yadav VK, Abraham JK, Mani P, Kulshrestha R, Chowdhury S. QuadBase: genome-wide database of G4 DNA occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes. Nucleic Acids Res. (2008) 36. in press (gkm781). Gauthier JP, Legeai F, Zasadzinski A, Rispe C, Tagu D. AphidBase: a database for aphid genomic resources. Bioinformatics (2007) 23:783–784 Prickett MD, Page M, Douglas AE, Thomas GH. BuchneraBASE: a post-genomic resource for Buchnera sp. APS. Bioinformatics (2006) 22:641–642 Errami M, Wren JD, Hicks JM, Garner HR. eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publications. Nucleic Acids Res. (2007) 35:W12–W15 Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides NC. The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res. (2006) 34:D332–D334. Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. (2007) 35:D5–D12 Odronitz F, Hellkamp M, Kollmar M. diArk–a resource for eukaryotic genome research. BMC Genomics (2007) 8:103 Holm L, Sander C. The FSSP database of structurally aligned protein fold families. Nucleic Acids Res. (1994) 22:3600–3609. Holm L, Sander C. Touring protein fold space with Dali/FSSP. Nucleic Acids Res. (1998) 26:316–319 Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, et al. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. (2003) 31:278–281 Nord AS, Chang PJ, Conklin BR, Cox AV, Harper CA, Hicks GG, Huang CC, Johns SJ, Kawamoto M, et al. The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse. Nucleic Acids Res. (2006) 34:D642–D648 Stamm S, Riethoven JJ, Le Texier V, Gopalakrishnan C, Kumanduri V, Tang Y, Barbosa-Morais NL, Thanaraj TA. ASD: a bioinformatics resource on alternative splicing. Nucleic Acids Res. (2006) 34:D46–D55 Le Texier V, Riethoven JJ, Kumanduri V, Gopalakrishnan C, Lopez F, Gautheret D, Thanaraj TA. AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation. BMC Bioinformatics (2006) 7:169