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The process of producing microarray data involves multiple steps, some of which …


Biology Articles » Bioinformatics » MDQC: a new quality assessment method for microarrays based on quality control reports » References

References
- MDQC: a new quality assessment method for microarrays based on quality control reports

  

Affymetrix. GeneChip Expression Analysis. Data Analysis Fundamentals. ( (2004) ) Stanta Clara, CA: Affymetrix, Inc..

Affymetrix. GeneChip Operating Software. Technical Manual. Rev. 5. ( (2005) )..

Bolstad BM, et al. Quality assessment of Affymetrix GeneChip data. In: Bioinformatics and Computational Biology Solutions Using R and Bioconductor, —Gentleman R, et al, eds. ( (2005) ) New York: Springer..

Brettschneider J, et al. Quality assessment for short oligonucleotide arrays. Forthcoming in Technometrics, ( (2007) )..

Bylesjö M, et al. MASQOT: a method for cDNA microarray spot quality control. BMC Bioinformatics, ( (2005) ) 6, : 250.

Croux C, Haesbroeck G. Principal component analysis based on robust estimators of the covariance or correlation matrix: influence functions and efficiencies. Biometrika, ( (2000) ) 87, : 603–618.

Finkelstein D. Trends in the quality of data from 5168 oligonucleotide microarrays from a single facility. J. Biomol. Tech, ( (2005) ) 16, : 143–153.

Hautaniemi S, et al. A novel strategy for microarray quality control using Bayesian networks. Bioinformatics, ( (2003) ) 19, : 2031–2038.

Huber M, et al. A fast method for robust principal components with applications to chemometrics. Chemometrics and Intell. Lab. Syst, ( (2002) ) 60, : 101–111.

Johnson RA, Wichern DW. Applied Multivariate Statistical Analysis, ( (1999) ) 4. New Jersey: Prentice Hall, Upper Saddle River..

Landea JD, et al. Gene expression profiling in murine obliterative airway disease. Am. J. Transplan, ( (2005) ) 5, : 2170–2184.

Lopuhaä HP. On the relation between S-estimators and M-estimators of multivariate location and covariance. Ann. Stat, ( (1989) ) 17, : 1662–1683..

Mahalanobis PC. On the generalized distance in statistics. Proc. Natl. Inst. Sci. India, ( (1936) ) 2, : 49–55..

Model F, et al. Statistical process control for large scale microarray experiments. Bioinformatics, ( (2002) ) 18, : 155–163..

Ross ME, et al. Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. Blood, ( (2003) ) 102, : 2951–2959.

Rousseeuw PJ, Leroy A. Robust Regression and Outliers Detection, ( (1987) ) New York: Wiley..

Sauer U, et al. Quick and simple: quality control of microarray data. Bioinformatics, ( (2005) ) 21, : 1572–1578.

Wang X, et al. Quantitative quality control in microarray image processing and data acquisition. Nucleic Acids Res, ( (2001) ) 29, : e75.

Wilson C, Miller C. Simpleaffy: a BioConductor package for Affymetrix quality control and data analysis. Bioinformatics, ( (2005) ) 21, : 3683–3685.

Zhang W, et al. Microarray Quality Control. Hoboken,, ( (2004) ) New Jersey: John Wiley and Sons, Inc..


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